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Annual Plant Reviews Volume 35: Plant Systems Biology by Gloria Coruzzi, Rodrigo Gutiérrez

By Gloria Coruzzi, Rodrigo Gutiérrez

Plant platforms Biology is a wonderful new addition to the more and more recognized and revered Annual Plant Reviews. cut up into elements, this identify deals the reader:

  • A primary conceptual framework for platforms Biology together with community TheoryContent:
    Chapter 1 structures Biology: ideas and functions in Plant study (pages 1–40): Gloria M. Coruzzi, Alejandro R. Burga, Manpreet S. Katari and Rodrigo A. Gutierrez
    Chapter 2 an outline of structures Biology (pages 41–66): Reka Albert and Sarah M. Assmann
    Chapter three Prokaryotic platforms Biology (pages 67–136): Thadeous Kacmarczyk, Peter Waltman and Richard Bonneau
    Chapter four Animal platforms Biology: in the direction of a structures View of improvement in C. Elegans (pages 137–165): Anita Fernandez, Fabio Piano and Kristin C. Gunsalus
    Chapter five software program instruments for structures Biology: Visualizing the results of N Experiments on M Entities (pages 167–195): Chris Poultney and Dennis Shasha
    Chapter 6 The Plant Genome: interpreting the Transcriptional Hardwiring (pages 196–228): Erich Grotewold and Nathan Springer
    Chapter 7 The RNA international: deciding on miRNA?Target RNA Pairs as attainable lacking hyperlinks in Multi?Network types (pages 229–242): Pamela J. eco-friendly and Blake C. Meyers
    Chapter eight Proteomics: environment the level for platforms Biology (pages 243–257): Scott C. Peck
    Chapter nine Metabolomics: Integrating the Metabolome and the Proteome for structures Biology (pages 258–289): Wolfram Weckwerth
    Chapter 10 From the Ionome to the Genome: determining the Gene Networks that keep an eye on the Mineral content material of crops (pages 290–303): Mary Lou Guerinot, Ivan Baxter and David E. Salt
    Chapter eleven improvement and structures Biology: driving the Genomics Wave in the direction of a structures knowing of Root improvement (pages 304–330): Siobhan M. Brady and Philip N. Benfey
    Chapter 12 views on Ecological and Evolutionary platforms Biology (pages 331–349): Christina L. Richards, Yoshie Hanzawa, Manpreet S. Katari, Ian M. Ehrenreich, Kathleen E. Engelmann and Michael D. Purugganan

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Extra resources for Annual Plant Reviews Volume 35: Plant Systems Biology

Sample text

As discussed in other sections and chapters in this book, it is from the interactions of the parts that the properties typically associated with biological systems emerge. In this section, we shall briefly review the interactions that are better understood at a genome-wide level. It is important to emphasize that Arabidopsis and plants, in general, lag behind other systems in the systematic characterization of the interactions between molecular components. As a community, we should attack this limitation in order to advance plant systems research.

In 2000, the complete genome sequence of the plant A. thaliana was published (Initiative, 2000). , 2005). , 2007) are available. , 2008). Genomes provide the parts lists as far as genes and their products (proteins and RNAs) are concerned. Due to lack of financial support or simply due to the large size, the genomes of many species are not and may not be completely sequenced. In addition, much of the DNA in large genomes is thought to correspond to repetitive DNA and transposable elements (Bennet and Ilia, 1995).

Gene expression networks are useful to hypothesize gene function. But how many microarray experiments do we need in order to have a robust co-expression network? , 2007). Aoki et al. (2007) found that the density of networks derived from microarray experiments from Arabidopsis reached equilibrium when more than 100 arrays were used. This result suggests that 100 experiments are sufficient to build a robust co-expression network. It remains to be determined whether this is insensitive to the experimental factors tested in the microarray experiments utilized.

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